

It doesn’t have to be, but if all Linux apps were standalone binaries, installing apps would be a PITA. Flatpaks have better integration with the desktop environment (like automatically handling desktop shortcuts), can share runtimes to save space, have a standardized way of handling permissions and launch options, etc. The Linux world is moving towards flatpaks for many reasons, and the Tor Browser flatpak is marked as official from the Tor Project. Wouldn’t it be reasonable to expect it to work, and to get some sort of notification if it breaks?
If you don’t mind I am curious to hear your reasons. I personally agree with the developer, I think it’s a lot of work and doesn’t provide a meaningful win. If an attacker has access to the system, there are many other ways they can access your notes even if the notes are encrypted at rest. Based on the thread it sounds like what people actually want is isolation and access control, but I don’t think that responsibility should fall on the app developer, it should be handled by a broader system (like Veracrypt, or Flatpak).